Source Code for Biology and Medicine | Most Viewed

Submit a manuscript Register Follow us on

Explore journal

Articles

Display/download options Articles per page: 25 | 50 | 100

Display options

Editor's summary Citation

Download options

Send
To

	All
	1. 11117 Accesses	Research Wndchrm – an open source utility for biological image analysis Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, Ilya G Goldberg Source Code for Biology and Medicine 2008, 3:13 (8 July 2008) Abstract \| Full text \| PDF \| PubMed
	2. 9491 Accesses	Methodology Boolean network simulations for life scientists István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert Source Code for Biology and Medicine 2008, 3:16 (14 November 2008) Abstract \| Full text \| PDF \| PubMed
	3. 9287 Accesses	Research Purposeful selection of variables in logistic regression Zoran Bursac, C Heath Gauss, David Keith Williams, David W Hosmer Source Code for Biology and Medicine 2008, 3:17 (16 December 2008) Abstract \| Full text \| PDF \| PubMed
	4. 9148 Accesses	Software review Gbrowse Moby: a Web-based browser for BioMoby Services Mark Wilkinson Source Code for Biology and Medicine 2006, 1:4 (24 October 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	5. 9047 Accesses	Software review Flow: Statistics, visualization and informatics for flow cytometry Jacob Frelinger, Thomas B Kepler, Cliburn Chan Source Code for Biology and Medicine 2008, 3:10 (17 June 2008) Abstract \| Full text \| PDF \| PubMed
	6. 8596 Accesses	Software review Permutation – based statistical tests for multiple hypotheses Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng Source Code for Biology and Medicine 2008, 3:15 (21 October 2008) Abstract \| Full text \| PDF \| PubMed
	7. 8067 Accesses	Software review The Multiscale Systems Immunology project: software for cell-based immunological simulation Faheem Mitha, Timothy A Lucas, Feng Feng, Thomas B Kepler, Cliburn Chan Source Code for Biology and Medicine 2008, 3:6 (28 April 2008) Abstract \| Full text \| PDF \| PubMed
	8. 7719 Accesses	Software review OSPACS: Ultrasound image management system Will Stott, Andy Ryan, Ian J Jacobs, Usha Menon, Conrad Bessant, Christopher Jones Source Code for Biology and Medicine 2008, 3:11 (20 June 2008) Abstract \| Full text \| PDF \| PubMed
	9. 7475 Accesses	Research A traveling salesman approach for predicting protein functions Olin Johnson, Jing Liu Source Code for Biology and Medicine 2006, 1:3 (12 October 2006) Abstract \| Full text \| PDF \| PubMed
	10. 6278 Accesses	Research Bioinformatics process management: information flow via a computational journal Lance Feagan, Justin Rohrer, Alexander Garrett, Heather Amthauer, Ed Komp, David Johnson, Adam Hock, Terry Clark, Gerald Lushington, Gary Minden, Victor Frost Source Code for Biology and Medicine 2007, 2:9 (3 December 2007) Abstract \| Full text \| PDF \| PubMed
	11. 6200 Accesses	Research Genome display tool: visualizing features in complex data sets Lalitha Viswanath, Yue Lu, George E Fox Source Code for Biology and Medicine 2007, 2:1 (14 February 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12. 6176 Accesses	Editorial Welcome to Source Code for Biology and Medicine Leif E Peterson, Emmanuel C Ifeachor Source Code for Biology and Medicine 2006, 1:1 (12 October 2006) Abstract \| Full text \| PDF
	13. 5913 Accesses	Software review The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures Alessio Ceroni, Anne Dell, Stuart M Haslam Source Code for Biology and Medicine 2007, 2:3 (7 August 2007) Abstract \| Full text \| PDF \| PubMed
	14. 5861 Accesses	Software review SAMMate: a GUI tool for processing short read alignments in SAM/BAM format Guorong Xu, Nan Deng, Zhiyu Zhao, Thair Judeh, Erik Flemington, Dongxiao Zhu Source Code for Biology and Medicine 2011, 6:2 (13 January 2011) Abstract \| Full text \| PDF \| PubMed \| 1 comment
	15. 5846 Accesses	Methodology DADOS-Prospective: an open source application for Web-based prospective data collection Lam Nguyen, Anand Shah, Matthew Harker, Henrique Martins, Mariana McCready, Andreia Menezes, Danny O Jacobs, Ricardo Pietrobon Source Code for Biology and Medicine 2006, 1:7 (13 November 2006) Abstract \| Full text \| PDF \| PubMed
	16. 5721 Accesses	Software review LSID Tester, a tool for testing Life Science Identifier resolution services Roderic DM Page Source Code for Biology and Medicine 2008, 3:2 (18 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	17. 5371 Accesses	Research Motmot, an open-source toolkit for realtime video acquisition and analysis Andrew D Straw, Michael H Dickinson Source Code for Biology and Medicine 2009, 4:5 (22 July 2009) Abstract \| Full text \| PDF \| PubMed
	18. 5346 Accesses	Software review A software pipeline for processing and identification of fungal ITS sequences R Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg Source Code for Biology and Medicine 2009, 4:1 (15 January 2009) Abstract \| Full text \| PDF \| PubMed
	19. 5303 Accesses	Software review Faunus: An object oriented framework for molecular simulation Mikael Lund, Martin Trulsson, Björn Persson Source Code for Biology and Medicine 2008, 3:1 (1 February 2008) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20. 5213 Accesses	Research BISON: bio-interface for the semi-global analysis of network patterns Christopher Besemann, Anne Denton, Nathan J Carr, Birgit M Prüβ Source Code for Biology and Medicine 2006, 1:8 (29 November 2006) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	21. 5173 Accesses	Methodology The Shivplot: a graphical display for trend elucidation and exploratory analysis of microarray data Owen Z Woody, Robert Nadon Source Code for Biology and Medicine 2006, 1:6 (8 November 2006) Abstract \| Full text \| PDF \| PubMed
	22. 4935 Accesses	Software review TreeViewJ: An application for viewing and analyzing phylogenetic trees Matthew W Peterson, Marc E Colosimo Source Code for Biology and Medicine 2007, 2:7 (31 October 2007) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23. 4877 Accesses	Methodology KinImmerse: Macromolecular VR for NMR ensembles Jeremy N Block, David J Zielinski, Vincent B Chen, Ian W Davis, E Claire Vinson, Rachael Brady, Jane S Richardson, David C Richardson Source Code for Biology and Medicine 2009, 4:3 (17 February 2009) Abstract \| Full text \| PDF \| PubMed
	24. 4840 Accesses	Methodology GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje Source Code for Biology and Medicine 2009, 4:2 (26 January 2009) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The web-based system GRIP (Gold Reference dataset constructor from Information on Protein complexes) enables researchers to simply and quickly create and search reference datasets for protein-protein interaction predictions in Saccharomyces cerevisiae.
	25. 4775 Accesses	Software review A Perl toolkit for LIMS development James A Morris, Simon A Gayther, Ian J Jacobs, Christopher Jones Source Code for Biology and Medicine 2008, 3:4 (19 March 2008) Abstract \| Full text \| PDF \| PubMed