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1.
1839 Accesses
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Git can facilitate greater reproducibility and increased transparency in science
Karthik Ram Source Code for Biology and Medicine 2013, 8:7 (28 February 2013)
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2.
865 Accesses
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Purposeful selection of variables in logistic regression
Zoran Bursac, C Heath Gauss, David Keith Williams, David W Hosmer Source Code for Biology and Medicine 2008, 3:17 (16 December 2008)
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| PubMed | Cited on BioMed Central
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3.
676 Accesses
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How Not to Be a Bioinformatician
Manuel Corpas, Segun Fatumo, Reinhard Schneider Source Code for Biology and Medicine 2012, 7:3 (28 May 2012)
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4.
634 Accesses
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A methodology for projecting hospital bed need: a Michigan case study
Shaun A Langley, Steven P Fuller, Joseph P Messina, Ashton M Shortridge, Sue C Grady Source Code for Biology and Medicine 2010, 5:4 (25 March 2010)
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5.
432 Accesses
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BioPatRec: A modular research platform for the control of artificial limbs based on pattern recognition algorithms
Max Ortiz-Catalan, Rickard Brånemark, Bo Håkansson Source Code for Biology and Medicine 2013, 8:11 (18 April 2013)
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6.
418 Accesses
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The non-negative matrix factorization toolbox for biological data mining
Yifeng Li, Alioune Ngom Source Code for Biology and Medicine 2013, 8:10 (16 April 2013)
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7.
404 Accesses
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Permutation – based statistical tests for multiple hypotheses
Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng Source Code for Biology and Medicine 2008, 3:15 (21 October 2008)
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8.
346 Accesses
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Automatic Fortran to C++ conversion with FABLE
Ralf W Grosse-Kunstleve, Thomas C Terwilliger, Nicholas K Sauter, Paul D Adams Source Code for Biology and Medicine 2012, 7:5 (28 May 2012)
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9.
313 Accesses
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SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies
Mehdi Pirooznia, Fayaz Seifuddin, Fernando S Goes, Jeffrey T Leek, Peter P Zandi Source Code for Biology and Medicine 2013, 8:8 (11 March 2013)
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10.
285 Accesses
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Layout-aware text extraction from full-text PDF of scientific articles
Cartic Ramakrishnan, Abhishek Patnia, Eduard Hovy, Gully APC Burns Source Code for Biology and Medicine 2012, 7:7 (28 May 2012)
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11.
275 Accesses
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SAMMate: a GUI tool for processing short read alignments in SAM/BAM format
Guorong Xu, Nan Deng, Zhiyu Zhao, Thair Judeh, Erik Flemington, Dongxiao Zhu Source Code for Biology and Medicine 2011, 6:2 (13 January 2011)
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12.
256 Accesses
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Wndchrm – an open source utility for biological image analysis
Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, Ilya G Goldberg Source Code for Biology and Medicine 2008, 3:13 (8 July 2008)
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13.
203 Accesses
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Yabi: An online research environment for grid, high performance and cloud computing
Adam A Hunter, Andrew B Macgregor, Tamas O Szabo, Crispin A Wellington, Matthew I Bellgard Source Code for Biology and Medicine 2012, 7:1 (15 February 2012)
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Editor’s summary
Yabi, a new online research environment, provides transparent access to existing High Performance Computing (HPC) resources and complements current workflow environments by providing a rich and intuitive webbased user interface.
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14.
200 Accesses
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CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
Marco Galardini, Emanuele G Biondi, Marco Bazzicalupo, Alessio Mengoni Source Code for Biology and Medicine 2011, 6:11 (21 June 2011)
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15.
193 Accesses
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The Multiscale Systems Immunology project: software for cell-based immunological simulation
Faheem Mitha, Timothy A Lucas, Feng Feng, Thomas B Kepler, Cliburn Chan Source Code for Biology and Medicine 2008, 3:6 (28 April 2008)
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16.
188 Accesses
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RECOT: a tool for the coordinate transformation of next-generation sequencing reads for comparative genomics and transcriptomics
Akiko Izawa, Jun Sese Source Code for Biology and Medicine 2013, 8:6 (26 February 2013)
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17.
178 Accesses
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Boolean network simulations for life scientists
István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert Source Code for Biology and Medicine 2008, 3:16 (14 November 2008)
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18.
178 Accesses
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Changing computational research. The challenges ahead
Cameron Neylon, Jan Aerts, C Brown, Simon J Coles, Les Hatton, Daniel Lemire, K Millman, Peter Murray-Rust, Fernando Perez, Neil Saunders, Nigam Shah, Arfon Smith, Gaël Varoquaux, Egon Willighagen Source Code for Biology and Medicine 2012, 7:2 (28 May 2012)
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19.
167 Accesses
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Motmot, an open-source toolkit for realtime video acquisition and analysis
Andrew D Straw, Michael H Dickinson Source Code for Biology and Medicine 2009, 4:5 (22 July 2009)
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20.
160 Accesses
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KinImmerse: Macromolecular VR for NMR ensembles
Jeremy N Block, David J Zielinski, Vincent B Chen, Ian W Davis, E Claire Vinson, Rachael Brady, Jane S Richardson, David C Richardson Source Code for Biology and Medicine 2009, 4:3 (17 February 2009)
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21.
157 Accesses
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Flow: Statistics, visualization and informatics for flow cytometry
Jacob Frelinger, Thomas B Kepler, Cliburn Chan Source Code for Biology and Medicine 2008, 3:10 (17 June 2008)
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22.
155 Accesses
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Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes
Andrew J Perry, Bosco K Ho Source Code for Biology and Medicine 2013, 8:9 (19 March 2013)
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23.
149 Accesses
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LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine
Timothy G Bath, Selcuk Bozdag, Vackar Afzal, Daniel Crowther Source Code for Biology and Medicine 2011, 6:9 (13 May 2011)
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24.
147 Accesses
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FCC – An automated rule-based processing tool for life science data
Simon Barkow-Oesterreicher, Can Türker, Christian Panse Source Code for Biology and Medicine 2013, 8:3 (11 January 2013)
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25.
140 Accesses
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A software pipeline for processing and identification of fungal ITS sequences
R Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg Source Code for Biology and Medicine 2009, 4:1 (15 January 2009)
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