Software review
Nephele: genotyping via complete composition vectors and MapReduce
-
* Corresponding author: Marc E Colosimo mcolosimo@mitre.org
The MITRE Corporation, 202 Burlington Rd, Bedford MA 01730, USA
Source Code for Biology and Medicine 2011, 6:13 doi:10.1186/1751-0473-6-13
Published: 18 August 2011Additional files
Additional file 1:
Representative Standard Nomenclature Dataset of H5N1 Genotypes. A set of 94 sequences representing WHO expert-defined genotypes (http://www.who.int/csr/disease/avian_influenza/guidelines/nomenclature/ webcite).
Format: XLSX Size: 16KB Download file
Additional file 2:
Clustering of Eight Genes from Influenza H3N2 Viruses (HA, M1, NA, NP, NS1, PA, PB1, PB2). This dataset consists of 155 samples, taken from New York State during the 1999-2000, 2001-2002, 2002-2003, and 2003-2004 flu seasons.
Format: PDF Size: 67KB Download file
This file can be viewed with: Adobe Acrobat Reader