Table 2 |
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|
Additional software and libraries used by HAMSTER. |
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|
Software |
Minimum Version |
Purpose |
System |
Required? |
|
|
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|
Boost library [32] |
1.39.0 |
Used extensively |
Both |
Yes |
|
Graphviz (neato) [25] |
2.20.2 |
MST layout and generation |
layout-mst |
No |
|
Open MPI [26] |
1.2.7 |
Parallel processing of MST layout |
layout-mst |
No |
|
|
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|
The software and libraries that are used by HAMSTER, as well as their version and purpose. Only the first is required to compile the software; the others are optional. Graphviz is required to generate images while Open MPI improves the execution time of layout-mst by distributing work across processors. |
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|
Wan et al. Source Code for Biology and Medicine 2009 4:8 doi:10.1186/1751-0473-4-8 |
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