Table 1 |
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|
List of haplotype blocks whose haplotype frequencies are significantly different (P < 0.01) between CHB and JPT. |
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|
Chromosome |
Position |
Haplotype block |
Number of SNPs |
High-Score SNP |
Score |
Global P-value |
Gene Name |
Biological Function |
|
|
|
|||||||||
|
2 |
24871212 |
24869289-24909832 |
26 |
rs41523444 |
33.0 |
0.00774 |
CENPO |
intron |
|
|
2 |
205189112 |
205070386-205212654 |
69 |
rs12621708 |
33.2 |
0.00906 |
PARD3B |
intron |
|
|
5 |
18748116 |
18740543-18750444 |
5 |
rs11959018 |
32.1 |
0.00277 |
|||
|
7 |
134114362 |
134099273-134115148 |
10 |
rs3807337 |
29.5 |
0.007 |
CALD1 |
intron |
|
|
8 |
81952476 |
81912934-81997651 |
35 |
rs10957985 |
33.9 |
* |
0.0083 |
||
|
9 |
103425694 |
103425657-103427263 |
5 |
rs10115450 |
43.5 |
* |
0.00001 |
GRIN3A |
intron |
|
11 |
61080499 |
61049633-61102485 |
18 |
rs4939526 |
32.1 |
0.00421 |
SYT7 |
intron |
|
|
11 |
115945221 |
115943365-115950641 |
8 |
rs4938285 |
31.3 |
0.00819 |
|||
|
12 |
87163821 |
87149707-87191176 |
12 |
rs11104775 |
30.4 |
0.00762 |
|||
|
13 |
72589237 |
72589149-72599947 |
3 |
rs1333099 |
32.1 |
0.00186 |
|||
|
15 |
59355415 |
59306354-59363106 |
22 |
rs7175875 |
32.7 |
0.00294 |
|||
|
18 |
74579176 |
74562645-74583266 |
10 |
rs5022079 |
30.0 |
0.00648 |
|||
|
22 |
35929011 |
35927436-35929568 |
3 |
rs229562 |
28.0 |
0.00711 |
|||
|
|
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|
*Significantly different (P < 0.01) between JPT and CHB when SNP-based GWAS was used. |
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|
Misawa and Kamatani Source Code for Biology and Medicine 2009 4:7 doi:10.1186/1751-0473-4-7 |
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