Source Code for Biology and Medicine


Open Access Highly Access Software review

Permutation – based statistical tests for multiple hypotheses

Anyela Camargo1, Francisco Azuaje2, Haiying Wang3* and Huiru Zheng3

Author Affiliations

1 University of East Anglia, School of Computing, Norwich, NR4 7TJ, England, UK

2 Laboratory of Cardiovascular Research, CRP-Santé, L-1150, Luxembourg

3 University of Ulster at Jordanstown, School of Computing and Mathematics, Shore Road, Newtownabbey, Co. Antrim, BT37 0QB, Northern Ireland, UK

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Source Code for Biology and Medicine 2008, 3:15 doi:10.1186/1751-0473-3-15

Published: 21 October 2008

Additional files

Additional file 1:

Ptest software. Execute from command line like this\java Ptest.

Format: ZIP Size: 13KB Download file

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Additional file 2:

EasyInput library. Used by Ptest.

Format: ZIP Size: 2KB Download file

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Additional file 3:

README. Microsoft word file, it should be open with Microsoft word because it contains mathematical equations.

Format: RTF Size: 347KB Download file

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Additional file 4:

Example data set for Bartlett's test. 2 classes, 12 samples, 5 and 17 respectively, 8068 features. Plain text file can be open with any word processor.

Format: TXT Size: 563KB Download file

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Additional file 5:

Example data set for t-Test – unpaired samples. 2 classes, 12 samples – 5 and 17 respectively – 8068 features. Plain text file can be open with any word processor.

Format: TXT Size: 563KB Download file

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Additional file 6:

Example data set for Chi-square test – categorical data. 3 classes, 33 samples – 10, 12, 11 samples respectively – 334 features. Plain text file can be open with any word processor.

Format: TXT Size: 34KB Download file

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Additional file 7:

Example data set for ANOVA test. 3 classes, 37 samples – 7, 20 and 10 respectively – 14976 features. Plain text file can be open with any word processor.

Format: TXT Size: 5.9MB Download file

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