|
|
|
|
|
|
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text
Caroline Baroukh, Sherry Jenkins, Ruth Dannenfelser, Avi Ma'ayan Source Code for Biology and Medicine 2011, 6:15 (13 October 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
SNIT: SNP identification for strain typing
Ravi Vijaya Satya, Nela Zavaljevski, Jaques Reifman Source Code for Biology and Medicine 2011, 6:14 (8 September 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
Nephele: genotyping via complete composition vectors and MapReduce
Marc E Colosimo, Matthew W Peterson, Scott Mardis, Lynette Hirschman Source Code for Biology and Medicine 2011, 6:13 (18 August 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks
Koji Kyoda, Kotaro Baba, Hiroaki Kitano, Shuichi Onami Source Code for Biology and Medicine 2011, 6:12 (24 June 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
Marco Galardini, Emanuele G Biondi, Marco Bazzicalupo, Alessio Mengoni Source Code for Biology and Medicine 2011, 6:11 (21 June 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing
Kazuharu Misawa, Naoyuki Kamatani Source Code for Biology and Medicine 2011, 6:10 (24 May 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine
Timothy G Bath, Selcuk Bozdag, Vackar Afzal, Daniel Crowther Source Code for Biology and Medicine 2011, 6:9 (13 May 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
KBWS: an EMBOSS associated package for accessing bioinformatics web services
Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita Source Code for Biology and Medicine 2011, 6:8 (29 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
|
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
Layla Oesper, Daniele Merico, Ruth Isserlin, Gary D Bader Source Code for Biology and Medicine 2011, 6:7 (7 April 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
|
Creating web applications for spatial epidemiological analysis and mapping in R using Rwui
Richard Newton, Andrew Deonarine, Lorenz Wernisch Source Code for Biology and Medicine 2011, 6:6 (1 April 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format
Ryan L Webb, Avi Ma'ayan Source Code for Biology and Medicine 2011, 6:5 (21 March 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
Parallel biocomputing
Kenneth S Kompass, Thomas J Hoffmann, John S Witte Source Code for Biology and Medicine 2011, 6:4 (18 March 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results
Vineet K Joshi, Johannes M Freudenberg, Zhen Hu, Mario Medvedovic Source Code for Biology and Medicine 2011, 6:3 (17 January 2011)
Abstract | Full text | PDF | PubMed
|
|
|
|
SAMMate: a GUI tool for processing short read alignments in SAM/BAM format
Guorong Xu, Nan Deng, Zhiyu Zhao, Thair Judeh, Erik Flemington, Dongxiao Zhu Source Code for Biology and Medicine 2011, 6:2 (13 January 2011)
Abstract | Full text | PDF | PubMed |
|
|
|
|
Tools for efficient epistasis detection in genome-wide association study
Xiang Zhang, Shunping Huang, Fei Zou, Wei Wang Source Code for Biology and Medicine 2011, 6:1 (4 January 2011)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
|
DOG-SPOT database for comprehensive management of dog genetic research data
Julie AS Powell, Jeremy Allen, Nathan B Sutter Source Code for Biology and Medicine 2010, 5:10 (15 December 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
IHE cross-enterprise document sharing for imaging: interoperability testing software
Rita Noumeir, Bérubé Renaud Source Code for Biology and Medicine 2010, 5:9 (21 September 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
Chandra Sekhar Pedamallu, Janos Posfai Source Code for Biology and Medicine 2010, 5:8 (4 August 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
|
GTC: A web server for integrating systems biology data with web tools and desktop applications
Dan Tenenbaum, J Christopher Bare, Nitin S Baliga Source Code for Biology and Medicine 2010, 5:7 (13 July 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
EntrezAJAX: direct web browser access to the Entrez Programming Utilities
Nicholas J Loman, Mark J Pallen Source Code for Biology and Medicine 2010, 5:6 (21 June 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing
Kazuharu Misawa, Naoyuki Kamatani Source Code for Biology and Medicine 2010, 5:5 (4 June 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
A methodology for projecting hospital bed need: a Michigan case study
Shaun A Langley, Steven P Fuller, Joseph P Messina, Ashton M Shortridge, Sue C Grady Source Code for Biology and Medicine 2010, 5:4 (25 March 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
MADAM - An open source meta-analysis toolbox for R and Bioconductor
Karl G Kugler, Laurin AJ Mueller, Armin Graber Source Code for Biology and Medicine 2010, 5:3 (1 March 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
|
Dockres: a computer program that analyzes the output of virtual screening of small molecules
Mihaly Mezei, Ming-Ming Zhou Source Code for Biology and Medicine 2010, 5:2 (14 January 2010)
Abstract | Full text | PDF | PubMed
|
|
|
|
VersaCount: customizable manual tally software for cell counting
Charles C Kim, Joseph L DeRisi Source Code for Biology and Medicine 2010, 5:1 (13 January 2010)
Abstract | Full text | PDF | PubMed
|
