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| | Latest articles  [more info]
| Methodology
KinImmerse: Macromolecular VR for NMR ensembles
Jeremy N Block, David J Zielinski, Vincent B Chen, Ian W Davis, E Claire Vinson, Rachael Brady, Jane S Richardson, David C Richardson
Source Code for Biology and Medicine 2009, 4:3 (17 February 2009)
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Methodology
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
Source Code for Biology and Medicine 2009, 4:2 (26 January 2009)
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Software review
A software pipeline for processing and identification of fungal ITS sequences
R Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg
Source Code for Biology and Medicine 2009, 4:1 (15 January 2009)
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Research
Purposeful selection of variables in logistic regression
Zoran Bursac, C Heath Gauss, David Keith Williams, David W Hosmer
Source Code for Biology and Medicine 2008, 3:17 (16 December 2008)
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Methodology
Boolean network simulations for life scientists
István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert
Source Code for Biology and Medicine 2008, 3:16 (14 November 2008)
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Software review
Permutation  based statistical tests for multiple hypotheses
Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng
Source Code for Biology and Medicine 2008, 3:15 (21 October 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]
Software review
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis
Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang
Source Code for Biology and Medicine 2008, 3:14 (23 September 2008)
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Research
Wndchrm an open source utility for biological image analysis
Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, Ilya G Goldberg
Source Code for Biology and Medicine 2008, 3:13 (8 July 2008)
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Methodology
CRANKITE: A fast polypeptide backbone conformation sampler
Alexei A Podtelezhnikov, David L Wild
Source Code for Biology and Medicine 2008, 3:12 (24 June 2008)
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Software review
OSPACS: Ultrasound image management system
Will Stott, Andy Ryan, Ian J Jacobs, Usha Menon, Conrad Bessant, Christopher Jones
Source Code for Biology and Medicine 2008, 3:11 (20 June 2008)
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Software review
Flow: Statistics, visualization and informatics for flow cytometry
Jacob Frelinger, Thomas B Kepler, Cliburn Chan
Source Code for Biology and Medicine 2008, 3:10 (17 June 2008)
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Brief reports
FASH: A web application for nucleotides sequence search
Isana Veksler-Lublinksy, Danny Barash, Chai Avisar, Einav Troim, Paul Chew, Klara Kedem
Source Code for Biology and Medicine 2008, 3:9 (27 May 2008)
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Brief reports
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Pirkko Muhonen, Ranga N Parthasarathy, Anthony J Janckila, Kalman G Büki, H Kalervo Väänänen
Source Code for Biology and Medicine 2008, 3:8 (21 May 2008)
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Research
The MERG Suite: Tools for discovering competencies and associated learning resources
Ravi Teja Bhupatiraju, William R Hersh, Valerie Smothers, Michael Fordis, Peter S Greene
Source Code for Biology and Medicine 2008, 3:7 (14 May 2008)
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Software review
The Multiscale Systems Immunology project: software for cell-based immunological simulation
Faheem Mitha, Timothy A Lucas, Feng Feng, Thomas B Kepler, Cliburn Chan
Source Code for Biology and Medicine 2008, 3:6 (28 April 2008)
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Methodology
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Nicolas J Parker, Andrew G Parker
Source Code for Biology and Medicine 2008, 3:5 (18 April 2008)
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Software review
A Perl toolkit for LIMS development
James A Morris, Simon A Gayther, Ian J Jacobs, Christopher Jones
Source Code for Biology and Medicine 2008, 3:4 (19 March 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]
Research
Epigrass: a tool to study disease spread in complex networks
Flávio C Coelho, Oswaldo G Cruz, Cláudia T Codeço
Source Code for Biology and Medicine 2008, 3:3 (26 February 2008)
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Software review
LSID Tester, a tool for testing Life Science Identifier resolution services
Roderic DM Page
Source Code for Biology and Medicine 2008, 3:2 (18 February 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]
Software review
Faunus: An object oriented framework for molecular simulation
Mikael Lund, Martin Trulsson, Björn Persson
Source Code for Biology and Medicine 2008, 3:1 (1 February 2008)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles]
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