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Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
Chandra Sekhar Pedamallu, Janos Posfai
Source Code for Biology and Medicine 2010, 5:8 (4 August 2010)
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Brief reports
GTC: A web server for integrating systems biology data with web tools and desktop applications
Dan Tenenbaum, J Christopher Bare, Nitin S Baliga
Source Code for Biology and Medicine 2010, 5:7 (13 July 2010)
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Brief reports
EntrezAJAX: direct web browser access to the Entrez Programming Utilities
Nicholas J Loman, Mark J Pallen
Source Code for Biology and Medicine 2010, 5:6 (21 June 2010)
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Software review
ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing
Kazuharu Misawa, Naoyuki Kamatani
Source Code for Biology and Medicine 2010, 5:5 (4 June 2010)
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Methodology
A methodology for projecting hospital bed need: a Michigan case study
Shaun A Langley, Steven P Fuller, Joseph P Messina, Ashton M Shortridge, Sue C Grady
Source Code for Biology and Medicine 2010, 5:4 (25 March 2010)
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Software review
MADAM - An open source meta-analysis toolbox for R and Bioconductor
Karl G Kugler, Laurin AJ Mueller, Armin Graber
Source Code for Biology and Medicine 2010, 5:3 (1 March 2010)
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Software review
Dockres: a computer program that analyzes the output of virtual screening of small molecules
Mihaly Mezei, Ming-Ming Zhou
Source Code for Biology and Medicine 2010, 5:2 (14 January 2010)
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Software review
VersaCount: customizable manual tally software for cell counting
Charles C Kim, Joseph L DeRisi
Source Code for Biology and Medicine 2010, 5:1 (13 January 2010)
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Methodology
HAMSTER: visualizing microarray experiments as a set of minimum spanning trees
Raymond Wan, Larisa Kiseleva, Hajime Harada, Hiroshi Mamitsuka, Paul Horton
Source Code for Biology and Medicine 2009, 4:8 (20 November 2009)
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Software review
ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing
Kazuharu Misawa, Naoyuki Kamatani
Source Code for Biology and Medicine 2009, 4:7 (21 October 2009)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
Brief reports
A web server for interactive and zoomable Chaos Game Representation images
Kazuharu Arakawa, Kazuki Oshita, Masaru Tomita
Source Code for Biology and Medicine 2009, 4:6 (17 September 2009)
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Research
Motmot, an open-source toolkit for realtime video acquisition and analysis
Andrew D Straw, Michael H Dickinson
Source Code for Biology and Medicine 2009, 4:5 (22 July 2009)
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Software review
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format
Justina Krawczyk, Alexander Goesmann, Ralf Nolte, Martin Werber, Bernd Weisshaar
Source Code for Biology and Medicine 2009, 4:4 (21 July 2009)
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Methodology
KinImmerse: Macromolecular VR for NMR ensembles
Jeremy N Block, David J Zielinski, Vincent B Chen, Ian W Davis, E Claire Vinson, Rachael Brady, Jane S Richardson, David C Richardson
Source Code for Biology and Medicine 2009, 4:3 (17 February 2009)
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Methodology
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
Source Code for Biology and Medicine 2009, 4:2 (26 January 2009)
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Software review
A software pipeline for processing and identification of fungal ITS sequences
R Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg
Source Code for Biology and Medicine 2009, 4:1 (15 January 2009)
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Research
Purposeful selection of variables in logistic regression
Zoran Bursac, C Heath Gauss, David Keith Williams, David W Hosmer
Source Code for Biology and Medicine 2008, 3:17 (16 December 2008)
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Methodology
Boolean network simulations for life scientists
István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert
Source Code for Biology and Medicine 2008, 3:16 (14 November 2008)
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Software review
Permutation  based statistical tests for multiple hypotheses
Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng
Source Code for Biology and Medicine 2008, 3:15 (21 October 2008)
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Software review
Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis
Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang
Source Code for Biology and Medicine 2008, 3:14 (23 September 2008)
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