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 MADAM - An open source meta-analysis toolbox for R and
Bioconductor Karl G Kugler, Laurin AJ Mueller, Armin Graber Source Code for Biology and Medicine 2010, 5:3 (1 March 2010) [Abstract] [Provisional PDF] [PubMed] [Related articles] Software review
 Dockres: a computer program that analyzes the output of virtual screening of small molecules Mihaly Mezei, Ming-Ming Zhou Source Code for Biology and Medicine 2010, 5:2 (14 January 2010) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
 VersaCount: customizable manual tally software for cell counting Charles C Kim, Joseph L DeRisi Source Code for Biology and Medicine 2010, 5:1 (13 January 2010) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Methodology
 HAMSTER: visualizing microarray experiments as a set of minimum spanning trees Raymond Wan, Larisa Kiseleva, Hajime Harada, Hiroshi Mamitsuka, Paul Horton Source Code for Biology and Medicine 2009, 4:8 (20 November 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
 ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing Kazuharu Misawa, Naoyuki Kamatani Source Code for Biology and Medicine 2009, 4:7 (21 October 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Brief reports
 A web server for interactive and zoomable Chaos Game Representation images Kazuharu Arakawa, Kazuki Oshita, Masaru Tomita Source Code for Biology and Medicine 2009, 4:6 (17 September 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Motmot, an open-source toolkit for realtime video acquisition and analysis Andrew D Straw, Michael H Dickinson Source Code for Biology and Medicine 2009, 4:5 (22 July 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
 Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format Justina Krawczyk, Alexander Goesmann, Ralf Nolte, Martin Werber, Bernd Weisshaar Source Code for Biology and Medicine 2009, 4:4 (21 July 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Methodology
 KinImmerse: Macromolecular VR for NMR ensembles Jeremy N Block, David J Zielinski, Vincent B Chen, Ian W Davis, E Claire Vinson, Rachael Brady, Jane S Richardson, David C Richardson Source Code for Biology and Medicine 2009, 4:3 (17 February 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Methodology
 GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje Source Code for Biology and Medicine 2009, 4:2 (26 January 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central] Software review
  A software pipeline for processing and identification of fungal ITS sequences R Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg Source Code for Biology and Medicine 2009, 4:1 (15 January 2009) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Purposeful selection of variables in logistic regression Zoran Bursac, C Heath Gauss, David Keith Williams, David W Hosmer Source Code for Biology and Medicine 2008, 3:17 (16 December 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Methodology
  Boolean network simulations for life scientists István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert Source Code for Biology and Medicine 2008, 3:16 (14 November 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
  Permutation based statistical tests for multiple hypotheses Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng Source Code for Biology and Medicine 2008, 3:15 (21 October 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
 Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang Source Code for Biology and Medicine 2008, 3:14 (23 September 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Research
  Wndchrm an open source utility for biological image analysis Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, Ilya G Goldberg Source Code for Biology and Medicine 2008, 3:13 (8 July 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Methodology
 CRANKITE: A fast polypeptide backbone conformation sampler Alexei A Podtelezhnikov, David L Wild Source Code for Biology and Medicine 2008, 3:12 (24 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
  OSPACS: Ultrasound image management system Will Stott, Andy Ryan, Ian J Jacobs, Usha Menon, Conrad Bessant, Christopher Jones Source Code for Biology and Medicine 2008, 3:11 (20 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Software review
  Flow: Statistics, visualization and informatics for flow cytometry Jacob Frelinger, Thomas B Kepler, Cliburn Chan Source Code for Biology and Medicine 2008, 3:10 (17 June 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles] Brief reports
 FASH: A web application for nucleotides sequence search Isana Veksler-Lublinksy, Danny Barash, Chai Avisar, Einav Troim, Paul Chew, Klara Kedem Source Code for Biology and Medicine 2008, 3:9 (27 May 2008) [Abstract] [Full Text] [PDF] [PubMed] [Related articles]
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